The phylogenetic diversity of metagenomes
Webb12 juni 2024 · To make further progress in uncovering hidden strain-level diversity, it is thus crucial to reconstruct sample-specific assemblies from the analyzed metagenomes and to include as many genomes as possible for each species in reference databases.Because species have pangenomes that are likely to be “open” (i.e., without an upper bound on … WebbSpecifically, it documents how metagenomes can be analyzed to quantify community structure and diversity, assemble novel genomes, ... Briefly, marker gene, binning, and …
The phylogenetic diversity of metagenomes
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WebbThe phylogenetic diversity of metagenomes (Q34017552) From Wikidata. Jump to navigation Jump to search. scientific article. edit. Language Label Description Also known as; English: The phylogenetic diversity of metagenomes. scientific article. WebbThis work presents an approach to leverage phylogenetic analysis of metagenomic sequence data to conduct phylogeny-driven Bayesian hypothesis tests for the presence of an organism in a sample and applies new tools to analyze the phylogenetic diversity of microbial communities. Like all organisms on the planet, environmental microbes are …
Webb31 aug. 2011 · Phylogenetic diversity estimates based on the SSU-rRNA gene and the multi-gene metagenomic phylogeny were broadly concordant, suggesting that our approach … Webb31 aug. 2011 · Phylogenetic diversity--patterns of phylogenetic relatedness among organisms in ecological communities--provides important insights into the mechanisms …
WebbComparative genomic analyses of metagenomes from a variety of environments by two-way clustering of samples and functional gene categories demonstrated that the 4143-1 metagenome clustered most closely with that from a carbonate chimney from Lost City. WebbThe phylogenetic diversity of metagenomes. – DOAJ. Phylogenetic diversity--patterns of phylogenetic relatedness among organisms in ecological communities--provides …
Webb4 aug. 2011 · Biodiversity and intra-specific genetic diversity are interrelated and determine the potential of a community to survive and evolve. Both are considered together in …
WebbThe phylogenetic diversity of metagenomes (Q34017552) From Wikidata. Jump to navigation Jump to search. scientific article. edit. Language Label Description Also … green mile authorWebbThe resulting metagenomic phylogeny can be used to quantify the phylogenetic diversity of microbial communities based on metagenomic data sets. We applied this method to understand patterns of microbial phylogenetic diversity and community assembly along an oceanic depth gradient, and compared our findings to previous studies of this gradient … green mile applicationWebb1 dec. 2024 · The diversity of the captured metagenomes was higher in the grassland soils compared to the wheat fields ( Fig. 3 a). Similar to their functional gene abundances, the diversity of the targeted enzymes was also more similar between the grasslands than between wheat fields. green mile actors john coffeyWebb1 feb. 2024 · Hypersaline environments encompass aquatic and terrestrial habitats. While only a limited number of studies on the microbial diversity of saline soils have been carried out, hypersaline lakes and marine salterns have been thoroughly investigated, resulting in an aquatic-biased knowledge about life in hypersaline environments. To improve our … green mile all i wanted was cornbreadWebb1 apr. 2024 · This article increases the known phylogenetic diversity of bacteria and archaea by more than 40% in comparison with the available genomes in public … green mile actor michael clarke duncanWebbphylogenetic diversity of microbial communities based on metagenomic data sets. We applied this method to understand patterns of microbial phylogenetic diversity and … flying saucer restaurant worcester maWebb26 jan. 2024 · Here, we used 3078 metagenomes to analyse the distribution of PHA depolymerases in microbial communities from diverse aquatic, terrestrial and waste management systems. We significantly expand the recognized diversity of this protein family by screening 1914 Gb of sequence data and identifying 13 869 putative PHA … flying saucer reports